Build RAG Chatbot with Haystack, Zilliz Cloud, Google Vertex AI Gemini 2.0 Flash Thinking, and Optimum all-mpnet-base-v2

Introduction to RAG

Retrieval-Augmented Generation (RAG) is a game-changer for GenAI applications, especially in conversational AI. It combines the power of pre-trained large language models (LLMs) like OpenAI’s GPT with external knowledge sources stored in vector databases such as Milvus and Zilliz Cloud, allowing for more accurate, contextually relevant, and up-to-date response generation. A RAG pipeline usually consists of four basic components: a vector database, an embedding model, an LLM, and a framework.

Key Components We'll Use for This RAG Chatbot

This tutorial shows you how to build a simple RAG chatbot in Python using the following components:

Haystack: An open-source Python framework designed for building production-ready NLP applications, particularly question answering and semantic search systems. Haystack excels at retrieving information from large document collections through its modular architecture that combines retrieval and reader components. Ideal for developers creating search applications, chatbots, and knowledge management systems that require efficient document processing and accurate information extraction from unstructured text.
Zilliz Cloud: a fully managed vector database-as-a-service platform built on top of the open-source Milvus, designed to handle high-performance vector data processing at scale. It enables organizations to efficiently store, search, and analyze large volumes of unstructured data, such as text, images, or audio, by leveraging advanced vector search technology. It offers a free tier supporting up to 1 million vectors.
Google Vertex AI Gemini 2.0 Flash: A lightweight, high-speed AI model optimized for rapid inference and scalable tasks. It excels in real-time applications requiring low latency and cost-efficiency, such as chatbots, content summarization, and data processing. Ideal for enterprises needing fast, reliable outputs without compromising performance in high-throughput environments.
Optimum all-mpnet-base-v2: A high-performance sentence-transformers model optimized for semantic textual similarity, offering robust multilingual embeddings. Its strengths include efficient inference, scalability, and state-of-the-art accuracy in tasks like semantic search, clustering, and retrieval-augmented generation (RAG). Ideal for enterprise applications requiring fast, precise text analysis across diverse languages and domains.

By the end of this tutorial, you’ll have a functional chatbot capable of answering questions based on a custom knowledge base.

Note: Since we may use proprietary models in our tutorials, make sure you have the required API key beforehand.

Step 1: Install and Set Up Haystack

import os
import requests

from haystack import Pipeline
from haystack.components.converters import MarkdownToDocument

from haystack.components.preprocessors import DocumentSplitter
from haystack.components.writers import DocumentWriter

Step 2: Install and Set Up Google Vertex AI Gemini 2.0 Flash Thinking

Using theVertexAIGeminiGenerator with Haystack requires authentication using Google Cloud Application Default Credentials (ADCs). This means your application must be set up with credentials that allow it to access Google Cloud services. If you're not sure how to configure ADCs, check the official Google documentation for setup instructions.

It's important to use a Google Cloud account that has the right permissions to access a project with Google Vertex AI endpoints. Without proper access, the generator won’t work as expected.

To find your project ID, you can either look it up in the Google Cloud Console under the resource manager or run the following command in your terminal.

Now let's install and set up this model.

pip install google-vertex-haystack

from haystack_integrations.components.generators.google_vertex import VertexAIGeminiGenerator

generator = VertexAIGeminiGenerator(model="gemini-2.0-flash-thinking-exp-01-21")

Step 3: Install and Set Up Optimum all-mpnet-base-v2

Haystack's OptimumTextEmbedder embeds text strings using models loaded with the HuggingFace Optimum library. It uses the ONNX runtime for high-speed inference. Similarly to other Embedders, this component allows adding prefixes (and suffixes) to include instructions. For more details, refer to the Optimum API Reference.

pip install optimum-haystack

from haystack_integrations.components.embedders.optimum import OptimumTextEmbedder
from haystack.dataclasses import Document
from haystack_integrations.components.embedders.optimum import OptimumDocumentEmbedder

text_embedder = OptimumTextEmbedder(model="sentence-transformers/all-mpnet-base-v2")
text_embedder.warm_up()

document_embedder = OptimumDocumentEmbedder(model="sentence-transformers/all-mpnet-base-v2")
document_embedder.warm_up()

Step 4: Install and Set Up Zilliz Cloud

pip install --upgrade pymilvus milvus-haystack

from milvus_haystack import MilvusDocumentStore
from milvus_haystack.milvus_embedding_retriever import MilvusEmbeddingRetriever

document_store = MilvusDocumentStore(connection_args={"uri": ZILLIZ_CLOUD_URI, "token": ZILLIZ_CLOUD_TOKEN}, drop_old=True,)
retriever = MilvusEmbeddingRetriever(document_store=document_store, top_k=3)

Step 5: Build a RAG Chatbot

Now that you’ve set up all components, let’s start to build a simple chatbot. We’ll use the Milvus introduction doc as a private knowledge base. You can replace it your own dataset to customize your RAG chatbot.

url = 'https://raw.githubusercontent.com/milvus-io/milvus-docs/refs/heads/v2.5.x/site/en/about/overview.md'
example_file = 'example_file.md'
response = requests.get(url)
with open(example_file, 'wb') as f:
    f.write(response.content)
file_paths = [example_file]  # You can replace it with your own file paths.

indexing_pipeline = Pipeline()
indexing_pipeline.add_component("converter", MarkdownToDocument())
indexing_pipeline.add_component("splitter", DocumentSplitter(split_by="sentence", split_length=2))
indexing_pipeline.add_component("embedder", document_embedder)
indexing_pipeline.add_component("writer", DocumentWriter(document_store))
indexing_pipeline.connect("converter", "splitter")
indexing_pipeline.connect("splitter", "embedder")
indexing_pipeline.connect("embedder", "writer")
indexing_pipeline.run({"converter": {"sources": file_paths}})

# print("Number of documents:", document_store.count_documents())
  
question = "What is Milvus?"  # You can replace it with your own question.

retrieval_pipeline = Pipeline()
retrieval_pipeline.add_component("embedder", text_embedder)
retrieval_pipeline.add_component("retriever", retriever)
retrieval_pipeline.connect("embedder", "retriever")

retrieval_results = retrieval_pipeline.run({"embedder": {"text": question}})

# for doc in retrieval_results["retriever"]["documents"]:
#     print(doc.content)
#     print("-" * 10)

from haystack.utils import Secret
from haystack.components.builders import PromptBuilder

retriever = MilvusEmbeddingRetriever(document_store=document_store, top_k=3) 
 text_embedder = OptimumTextEmbedder(model="sentence-transformers/all-mpnet-base-v2")
text_embedder.warm_up()

prompt_template = """Answer the following query based on the provided context. If the context does
                     not include an answer, reply with 'I don't know'.\n
                     Query: {{query}}
                     Documents:
                     {% for doc in documents %}
                        {{ doc.content }}
                     {% endfor %}
                     Answer: 
                  """

rag_pipeline = Pipeline()
rag_pipeline.add_component("text_embedder", text_embedder)
rag_pipeline.add_component("retriever", retriever)
rag_pipeline.add_component("prompt_builder", PromptBuilder(template=prompt_template))
rag_pipeline.add_component("generator", generator)
rag_pipeline.connect("text_embedder.embedding", "retriever.query_embedding")
rag_pipeline.connect("retriever.documents", "prompt_builder.documents")
rag_pipeline.connect("prompt_builder", "generator")

results = rag_pipeline.run({"text_embedder": {"text": question}, "prompt_builder": {"query": question},})
print('RAG answer:\n', results["generator"]["replies"][0])

Optimization Tips

As you build your RAG system, optimization is key to ensuring peak performance and efficiency. While setting up the components is an essential first step, fine-tuning each one will help you create a solution that works even better and scales seamlessly. In this section, we’ll share some practical tips for optimizing all these components, giving you the edge to build smarter, faster, and more responsive RAG applications.

Haystack optimization tips

To optimize Haystack in a RAG setup, ensure you use an efficient retriever like FAISS or Milvus for scalable and fast similarity searches. Fine-tune your document store settings, such as indexing strategies and storage backends, to balance speed and accuracy. Use batch processing for embedding generation to reduce latency and optimize API calls. Leverage Haystack's pipeline caching to avoid redundant computations, especially for frequently queried documents. Tune your reader model by selecting a lightweight yet accurate transformer-based model like DistilBERT to speed up response times. Implement query rewriting or filtering techniques to enhance retrieval quality, ensuring the most relevant documents are retrieved for generation. Finally, monitor system performance with Haystack’s built-in evaluation tools to iteratively refine your setup based on real-world query performance.

Zilliz Cloud optimization tips

Optimizing Zilliz Cloud for a RAG system involves efficient index selection, query tuning, and resource management. Use Hierarchical Navigable Small World (HNSW) indexing for high-speed, approximate nearest neighbor search while balancing recall and efficiency. Fine-tune ef_construction and M parameters based on your dataset size and query workload to optimize search accuracy and latency. Enable dynamic scaling to handle fluctuating workloads efficiently, ensuring smooth performance under varying query loads. Implement data partitioning to improve retrieval speed by grouping related data, reducing unnecessary comparisons. Regularly update and optimize embeddings to keep results relevant, particularly when dealing with evolving datasets. Use hybrid search techniques, such as combining vector and keyword search, to improve response quality. Monitor system metrics in Zilliz Cloud’s dashboard and adjust configurations accordingly to maintain low-latency, high-throughput performance.

Google Vertex AI Gemini 2.0 Flash optimization tips

To optimize Gemini 2.0 Flash in RAG, fine-tune input chunking to balance context relevance and token limits—aim for 512–1024 tokens. Use structured queries with explicit filters (e.g., metadata, date ranges) to improve retrieval precision. Adjust temperature (0.1–0.3) and top-p (0.7–0.9) to reduce hallucination while maintaining coherence. Cache frequent retrievals to minimize latency and costs. Preprocess documents to remove noise and enhance embeddings. Test hybrid search (keyword + vector) for complex queries. Monitor token usage and response quality via Vertex AI’s logging tools for iterative tuning.

Optimum all-mpnet-base-v2 optimization tips

To optimize Optimum all-mpnet-base-v2 in a RAG setup, preprocess input text by trimming redundant whitespace, normalizing casing, and splitting long documents into smaller chunks (≤512 tokens) to align with the model’s max sequence length. Use batch processing for embeddings to leverage GPU parallelism, adjusting batch size based on GPU memory. Quantize the model via ONNX Runtime or FP16 precision for faster inference. Cache frequently accessed embeddings to reduce recomputation, and pair with efficient vector search libraries (e.g., FAISS) for low-latency retrieval. Regularly update and prune the document corpus to maintain relevance.

By implementing these tips across your components, you'll be able to enhance the performance and functionality of your RAG system, ensuring it’s optimized for both speed and accuracy. Keep testing, iterating, and refining your setup to stay ahead in the ever-evolving world of AI development.

RAG Cost Calculator: A Free Tool to Calculate Your Cost in Seconds

Estimating the cost of a Retrieval-Augmented Generation (RAG) pipeline involves analyzing expenses across vector storage, compute resources, and API usage. Key cost drivers include vector database queries, embedding generation, and LLM inference.

RAG Cost Calculator is a free tool that quickly estimates the cost of building a RAG pipeline, including chunking, embedding, vector storage/search, and LLM generation. It also helps you identify cost-saving opportunities and achieve up to 10x cost reduction on vector databases with the serverless option.

Calculate your RAG cost now.

Calculate your RAG cost

What Have You Learned?

By diving into this tutorial, you’ve unlocked the power of building a modern RAG system from the ground up, weaving together cutting-edge tools to create something truly impactful. You learned how Haystack acts as the backbone, orchestrating the entire pipeline with its flexible framework—connecting data sources, preprocessing documents, and managing the flow between components. Optimum all-mpnet-base-v2 stepped in as your trusty embedding model, transforming text into rich, semantic vectors that capture meaning with precision, ensuring your system understands context deeply. Then came Zilliz Cloud, the high-performance vector database that stores and retrieves these embeddings at lightning speed, scaling effortlessly to handle even the most demanding datasets. Finally, Google Vertex AI Gemini 2.0 Flash became your creative powerhouse, generating human-like responses by synthesizing retrieved information into coherent, natural answers. Along the way, you discovered optimization gems like tweaking chunk sizes for better context retention, tuning retrieval thresholds for accuracy, and balancing speed with cost-efficiency—skills that turn a functional RAG into a polished, production-ready tool. And let’s not forget the free RAG cost calculator, your secret weapon for budgeting deployments without surprises!

Now, armed with this knowledge, you’re ready to build smarter, faster, and more intuitive AI applications. Imagine the possibilities: chatbots that answer with unmatched relevance, search engines that feel almost psychic, or custom assistants that revolutionize workflows. The tools are in your hands, the roadmap is clear, and the future is wide open. So go ahead—experiment, iterate, and innovate. Tweak those parameters, explore new datasets, and push the boundaries of what RAG can do. Every line of code you write brings us closer to a world where information flows seamlessly and AI empowers everyone. Start building today, and who knows? Your creation might just be the next big thing. Let’s make it happen! 🚀

Further Resources

🌟 In addition to this RAG tutorial, unleash your full potential with these incredible resources to level up your RAG skills.

How to Build a Multimodal RAG | Documentation
How to Enhance the Performance of Your RAG Pipeline
Graph RAG with Milvus | Documentation
How to Evaluate RAG Applications - Zilliz Learn
Generative AI Resource Hub | Zilliz

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