Build RAG Chatbot with Haystack, Zilliz Cloud, Cohere Command R, and OpenAI text-embedding-3-large

Introduction to RAG

Retrieval-Augmented Generation (RAG) is a game-changer for GenAI applications, especially in conversational AI. It combines the power of pre-trained large language models (LLMs) like OpenAI’s GPT with external knowledge sources stored in vector databases such as Milvus and Zilliz Cloud, allowing for more accurate, contextually relevant, and up-to-date response generation. A RAG pipeline usually consists of four basic components: a vector database, an embedding model, an LLM, and a framework.

Key Components We'll Use for This RAG Chatbot

This tutorial shows you how to build a simple RAG chatbot in Python using the following components:

Haystack: An open-source Python framework designed for building production-ready NLP applications, particularly question answering and semantic search systems. Haystack excels at retrieving information from large document collections through its modular architecture that combines retrieval and reader components. Ideal for developers creating search applications, chatbots, and knowledge management systems that require efficient document processing and accurate information extraction from unstructured text.
Zilliz Cloud: a fully managed vector database-as-a-service platform built on top of the open-source Milvus, designed to handle high-performance vector data processing at scale. It enables organizations to efficiently store, search, and analyze large volumes of unstructured data, such as text, images, or audio, by leveraging advanced vector search technology. It offers a free tier supporting up to 1 million vectors.
Cohere Command R: A scalable enterprise AI model optimized for Retrieval-Augmented Generation (RAG), designed to handle complex workflows with high accuracy. Strengths include multilingual support, low-latency performance, and secure integration with business data. Ideal for automating customer support, data analysis, and generating context-aware insights from large datasets.
OpenAI text-embedding-3-large: A state-of-the-art embedding model designed to convert text into high-dimensional vectors, capturing deep semantic relationships. Renowned for its accuracy, scalability, and ability to handle long contexts (up to 8192 tokens), it excels in semantic search, retrieval-augmented generation (RAG), recommendation systems, and multilingual NLP tasks requiring nuanced language understanding.

By the end of this tutorial, you’ll have a functional chatbot capable of answering questions based on a custom knowledge base.

Note: Since we may use proprietary models in our tutorials, make sure you have the required API key beforehand.

Step 1: Install and Set Up Haystack

import os
import requests

from haystack import Pipeline
from haystack.components.converters import MarkdownToDocument

from haystack.components.preprocessors import DocumentSplitter
from haystack.components.writers import DocumentWriter

Step 2: Install and Set Up Cohere Command R

To use Cohere models with Haystack for a RAG pipeline, you need to get a Cohere API Key first. You can write this key in:

The api_key init parameter using Secret API
The COHERE_API_KEY environment variable (recommended)

Now, let's install and set up the Cohere model.

pip install cohere-haystack

from haystack_integrations.components.generators.cohere import CohereGenerator

generator = CohereGenerator(model="command-r")

Step 3: Install and Set Up OpenAI text-embedding-3-large

Text documents often come with a set of metadata. If they are distinctive and semantically meaningful, you can embed them along with the text of the document to improve retrieval.

from haystack import Document
from haystack.components.embedders import OpenAIDocumentEmbedder

doc = Document(content="some text",meta={"title": "relevant title", "page number": 18})

document_embedder = OpenAIDocumentEmbedder(meta_fields_to_embed=["title"])

docs_w_embeddings = embedder.run(documents=[doc])["documents"]

Now let's install and set up the model.

from haystack import Document
from haystack.components.embedders import OpenAIDocumentEmbedder
from haystack.components.embedders import OpenAITextEmbedder

text_embedder = OpenAITextEmbedder(api_key=Secret.from_token("<your-api-key>"), model="text-embedding-3-large")
document_embedder = OpenAIDocumentEmbedder(api_key=Secret.from_token("<your-api-key>"), model="text-embedding-3-large")

Step 4: Install and Set Up Zilliz Cloud

pip install --upgrade pymilvus milvus-haystack

from milvus_haystack import MilvusDocumentStore
from milvus_haystack.milvus_embedding_retriever import MilvusEmbeddingRetriever

document_store = MilvusDocumentStore(connection_args={"uri": ZILLIZ_CLOUD_URI, "token": ZILLIZ_CLOUD_TOKEN}, drop_old=True,)
retriever = MilvusEmbeddingRetriever(document_store=document_store, top_k=3)

Step 5: Build a RAG Chatbot

Now that you’ve set up all components, let’s start to build a simple chatbot. We’ll use the Milvus introduction doc as a private knowledge base. You can replace it your own dataset to customize your RAG chatbot.

url = 'https://raw.githubusercontent.com/milvus-io/milvus-docs/refs/heads/v2.5.x/site/en/about/overview.md'
example_file = 'example_file.md'
response = requests.get(url)
with open(example_file, 'wb') as f:
    f.write(response.content)
file_paths = [example_file]  # You can replace it with your own file paths.

indexing_pipeline = Pipeline()
indexing_pipeline.add_component("converter", MarkdownToDocument())
indexing_pipeline.add_component("splitter", DocumentSplitter(split_by="sentence", split_length=2))
indexing_pipeline.add_component("embedder", document_embedder)
indexing_pipeline.add_component("writer", DocumentWriter(document_store))
indexing_pipeline.connect("converter", "splitter")
indexing_pipeline.connect("splitter", "embedder")
indexing_pipeline.connect("embedder", "writer")
indexing_pipeline.run({"converter": {"sources": file_paths}})

# print("Number of documents:", document_store.count_documents())
  
question = "What is Milvus?"  # You can replace it with your own question.

retrieval_pipeline = Pipeline()
retrieval_pipeline.add_component("embedder", text_embedder)
retrieval_pipeline.add_component("retriever", retriever)
retrieval_pipeline.connect("embedder", "retriever")

retrieval_results = retrieval_pipeline.run({"embedder": {"text": question}})

# for doc in retrieval_results["retriever"]["documents"]:
#     print(doc.content)
#     print("-" * 10)

from haystack.utils import Secret
from haystack.components.builders import PromptBuilder

retriever = MilvusEmbeddingRetriever(document_store=document_store, top_k=3) 
 text_embedder = OpenAITextEmbedder(api_key=Secret.from_token("<your-api-key>"), model="text-embedding-3-large")

prompt_template = """Answer the following query based on the provided context. If the context does
                     not include an answer, reply with 'I don't know'.\n
                     Query: {{query}}
                     Documents:
                     {% for doc in documents %}
                        {{ doc.content }}
                     {% endfor %}
                     Answer: 
                  """

rag_pipeline = Pipeline()
rag_pipeline.add_component("text_embedder", text_embedder)
rag_pipeline.add_component("retriever", retriever)
rag_pipeline.add_component("prompt_builder", PromptBuilder(template=prompt_template))
rag_pipeline.add_component("generator", generator)
rag_pipeline.connect("text_embedder.embedding", "retriever.query_embedding")
rag_pipeline.connect("retriever.documents", "prompt_builder.documents")
rag_pipeline.connect("prompt_builder", "generator")

results = rag_pipeline.run({"text_embedder": {"text": question}, "prompt_builder": {"query": question},})
print('RAG answer:\n', results["generator"]["replies"][0])

Optimization Tips

As you build your RAG system, optimization is key to ensuring peak performance and efficiency. While setting up the components is an essential first step, fine-tuning each one will help you create a solution that works even better and scales seamlessly. In this section, we’ll share some practical tips for optimizing all these components, giving you the edge to build smarter, faster, and more responsive RAG applications.

Haystack optimization tips

To optimize Haystack in a RAG setup, ensure you use an efficient retriever like FAISS or Milvus for scalable and fast similarity searches. Fine-tune your document store settings, such as indexing strategies and storage backends, to balance speed and accuracy. Use batch processing for embedding generation to reduce latency and optimize API calls. Leverage Haystack's pipeline caching to avoid redundant computations, especially for frequently queried documents. Tune your reader model by selecting a lightweight yet accurate transformer-based model like DistilBERT to speed up response times. Implement query rewriting or filtering techniques to enhance retrieval quality, ensuring the most relevant documents are retrieved for generation. Finally, monitor system performance with Haystack’s built-in evaluation tools to iteratively refine your setup based on real-world query performance.

Zilliz Cloud optimization tips

Optimizing Zilliz Cloud for a RAG system involves efficient index selection, query tuning, and resource management. Use Hierarchical Navigable Small World (HNSW) indexing for high-speed, approximate nearest neighbor search while balancing recall and efficiency. Fine-tune ef_construction and M parameters based on your dataset size and query workload to optimize search accuracy and latency. Enable dynamic scaling to handle fluctuating workloads efficiently, ensuring smooth performance under varying query loads. Implement data partitioning to improve retrieval speed by grouping related data, reducing unnecessary comparisons. Regularly update and optimize embeddings to keep results relevant, particularly when dealing with evolving datasets. Use hybrid search techniques, such as combining vector and keyword search, to improve response quality. Monitor system metrics in Zilliz Cloud’s dashboard and adjust configurations accordingly to maintain low-latency, high-throughput performance.

Cohere Command R optimization tips

To optimize Cohere Command R in a RAG setup, fine-tune prompts for clarity and specificity, using explicit instructions to guide context-aware responses. Limit input context to relevant chunks (e.g., 256-512 tokens) to reduce noise and computational overhead. Adjust temperature and top-p values to balance creativity and factual accuracy—lower values enhance precision for retrieval tasks. Implement query augmentation (e.g., synonyms, rephrasing) to improve retrieval alignment. Use Cohere’s built-in reranking to prioritize high-confidence documents. Regularly validate outputs against source data to minimize hallucinations and ensure consistency. Profile latency and batch requests where possible for scalability.

OpenAI text-embedding-3-large optimization tips

Optimize OpenAI text-embedding-3-large in RAG by adjusting the dimensions parameter to balance accuracy and efficiency—lower values reduce latency and cost while retaining semantic relevance. Batch embedding requests to maximize throughput, preprocess text to remove noise (e.g., truncate to 8191 tokens, normalize whitespace), and cache frequent queries. Use cosine similarity for retrieval alignment, validate embeddings with domain-specific benchmarks, and fine-tune hybrid search strategies (e.g., combining sparse/dense vectors) to improve recall. Monitor API rate limits and leverage asynchronous calls for scalability.

By implementing these tips across your components, you'll be able to enhance the performance and functionality of your RAG system, ensuring it’s optimized for both speed and accuracy. Keep testing, iterating, and refining your setup to stay ahead in the ever-evolving world of AI development.

RAG Cost Calculator: A Free Tool to Calculate Your Cost in Seconds

Estimating the cost of a Retrieval-Augmented Generation (RAG) pipeline involves analyzing expenses across vector storage, compute resources, and API usage. Key cost drivers include vector database queries, embedding generation, and LLM inference.

RAG Cost Calculator is a free tool that quickly estimates the cost of building a RAG pipeline, including chunking, embedding, vector storage/search, and LLM generation. It also helps you identify cost-saving opportunities and achieve up to 10x cost reduction on vector databases with the serverless option.

Calculate your RAG cost now.

Calculate your RAG cost

What Have You Learned?

By diving into this tutorial, you’ve unlocked the power of combining cutting-edge tools to build a robust RAG system from the ground up! You learned how Haystack acts as the flexible orchestration layer, streamlining workflows to connect your data, models, and applications seamlessly. Zilliz Cloud stepped in as your high-performance vector database, handling massive datasets with lightning-fast search capabilities to retrieve the most relevant context. Then came Cohere Command R, the LLM powerhouse that transforms retrieved data into insightful, natural-sounding responses—perfect for tasks requiring depth and nuance. And let’s not forget OpenAI’s text-embedding-3-large, which turned raw text into rich, semantic embeddings, ensuring your system understands context like a pro. Along the way, you discovered optimization tricks like tuning chunk sizes and balancing latency with accuracy, plus that handy free RAG cost calculator to keep your projects budget-friendly. Every piece plays a vital role, and seeing them work together is where the real magic happens!

Now you’re equipped with the knowledge to build smarter, faster, and more efficient AI applications. Whether you’re enhancing chatbots, automating research, or crafting personalized recommendations, your toolkit is ready. Experiment with different models, tweak retrieval strategies, or explore hybrid search setups—the possibilities are endless. Remember, every iteration brings you closer to perfection. So fire up Zilliz Cloud, let Haystack handle the heavy lifting, and watch your ideas come to life. The future of AI is yours to shape. Start building, keep optimizing, and go create something amazing—the world needs your innovations! 🚀

Further Resources

🌟 In addition to this RAG tutorial, unleash your full potential with these incredible resources to level up your RAG skills.

How to Build a Multimodal RAG | Documentation
How to Enhance the Performance of Your RAG Pipeline
Graph RAG with Milvus | Documentation
How to Evaluate RAG Applications - Zilliz Learn
Generative AI Resource Hub | Zilliz

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