Build RAG Chatbot with Haystack, Milvus, Mistral Codestral Mamba, and AmazonBedrock cohere embed-english-v3

Introduction to RAG

Retrieval-Augmented Generation (RAG) is a game-changer for GenAI applications, especially in conversational AI. It combines the power of pre-trained large language models (LLMs) like OpenAI’s GPT with external knowledge sources stored in vector databases such as Milvus and Zilliz Cloud, allowing for more accurate, contextually relevant, and up-to-date response generation. A RAG pipeline usually consists of four basic components: a vector database, an embedding model, an LLM, and a framework.

Key Components We'll Use for This RAG Chatbot

This tutorial shows you how to build a simple RAG chatbot in Python using the following components:

Haystack: An open-source Python framework designed for building production-ready NLP applications, particularly question answering and semantic search systems. Haystack excels at retrieving information from large document collections through its modular architecture that combines retrieval and reader components. Ideal for developers creating search applications, chatbots, and knowledge management systems that require efficient document processing and accurate information extraction from unstructured text.
Milvus: An open-source vector database optimized to store, index, and search large-scale vector embeddings efficiently, perfect for use cases like RAG, semantic search, and recommender systems. If you hate to manage your own infrastructure, we recommend using Zilliz Cloud, which is a fully managed vector database service built on Milvus and offers a free tier supporting up to 1 million vectors.
Mistral Codestral Mamba: A code-focused AI model designed to streamline software development by generating, analyzing, and optimizing code. Leveraging the Mamba architecture, it excels at processing long sequences efficiently, offering fast inference and precise code suggestions. Ideal for developers seeking productivity gains in code completion, debugging, and automation tasks.
AmazonBedrock Cohere Embed-English-v3: A state-of-the-art text embedding model designed to convert English text into high-dimensional vector representations, excelling in semantic understanding and scalability. Its strengths include robust performance in semantic search, clustering, and retrieval-augmented generation (RAG), making it ideal for applications like recommendation systems, document similarity analysis, and AI-driven content organization within enterprise workflows.

By the end of this tutorial, you’ll have a functional chatbot capable of answering questions based on a custom knowledge base.

Note: Since we may use proprietary models in our tutorials, make sure you have the required API key beforehand.

Step 1: Install and Set Up Haystack

import os
import requests

from haystack import Pipeline
from haystack.components.converters import MarkdownToDocument

from haystack.components.preprocessors import DocumentSplitter
from haystack.components.writers import DocumentWriter

Step 2: Install and Set Up Mistral Codestral Mamba

To use Mistral models, you need first to get a Mistral API key. You can write this key in:

The api_key init parameter using Secret API
The MISTRAL_API_KEY environment variable (recommended)

Now, after you get the API key, let's install the Install the mistral-haystack package.

pip install mistral-haystack

from haystack_integrations.components.generators.mistral import MistralChatGenerator
from haystack.components.generators.utils import print_streaming_chunk
from haystack.dataclasses import ChatMessage
from haystack.utils import Secret

generator = MistralChatGenerator(api_key=Secret.from_env_var("MISTRAL_API_KEY"), streaming_callback=print_streaming_chunk, model='open-codestral-mamba')

Step 3: Install and Set Up AmazonBedrock cohere embed-english-v3

Amazon Bedrock is a fully managed service that makes high-performing foundation models from leading AI startups and Amazon available through a unified API.

To use embedding models on Amazon Bedrock for text and document embedding together with Haystack, you need to initialize an AmazonBedrockTextEmbedder and AmazonBedrockDocumentEmbedderwith the model name, the AWS credentials (aws_access_key_id, aws_secret_access_key, and aws_region_name) should be set as environment variables, be configured as described above or passed as Secret arguments. Note, make sure the region you set supports Amazon Bedrock.

Now, let's start installing and setting up models with Amazon Bedrock.

pip install amazon-bedrock-haystack

import os
from haystack_integrations.components.embedders.amazon_bedrock import AmazonBedrockTextEmbedder
from haystack_integrations.components.embedders.amazon_bedrock import AmazonBedrockDocumentEmbedder
from haystack.dataclasses import Document

os.environ["AWS_ACCESS_KEY_ID"] = "..."
os.environ["AWS_SECRET_ACCESS_KEY"] = "..."
os.environ["AWS_DEFAULT_REGION"] = "us-east-1" # just an example

text_embedder = AmazonBedrockTextEmbedder(model="cohere.embed-english-v3",
                                                                                                                                                                        input_type="search_query"

document_embedder = AmazonBedrockDocumentEmbedder(model="cohere.embed-english-v3",
                                                                                                                                                                        input_type="search_document"

Step 4: Install and Set Up Milvus

pip install --upgrade pymilvus milvus-haystack

from milvus_haystack import MilvusDocumentStore
from milvus_haystack.milvus_embedding_retriever import MilvusEmbeddingRetriever

document_store = MilvusDocumentStore(connection_args={"uri": "./milvus.db"}, drop_old=True,)
retriever = MilvusEmbeddingRetriever(document_store=document_store, top_k=3)

Step 5: Build a RAG Chatbot

Now that you’ve set up all components, let’s start to build a simple chatbot. We’ll use the Milvus introduction doc as a private knowledge base. You can replace it your own dataset to customize your RAG chatbot.

url = 'https://raw.githubusercontent.com/milvus-io/milvus-docs/refs/heads/v2.5.x/site/en/about/overview.md'
example_file = 'example_file.md'
response = requests.get(url)
with open(example_file, 'wb') as f:
    f.write(response.content)
file_paths = [example_file]  # You can replace it with your own file paths.

indexing_pipeline = Pipeline()
indexing_pipeline.add_component("converter", MarkdownToDocument())
indexing_pipeline.add_component("splitter", DocumentSplitter(split_by="sentence", split_length=2))
indexing_pipeline.add_component("embedder", document_embedder)
indexing_pipeline.add_component("writer", DocumentWriter(document_store))
indexing_pipeline.connect("converter", "splitter")
indexing_pipeline.connect("splitter", "embedder")
indexing_pipeline.connect("embedder", "writer")
indexing_pipeline.run({"converter": {"sources": file_paths}})

# print("Number of documents:", document_store.count_documents())
  
question = "What is Milvus?"  # You can replace it with your own question.

retrieval_pipeline = Pipeline()
retrieval_pipeline.add_component("embedder", text_embedder)
retrieval_pipeline.add_component("retriever", retriever)
retrieval_pipeline.connect("embedder", "retriever")

retrieval_results = retrieval_pipeline.run({"embedder": {"text": question}})

# for doc in retrieval_results["retriever"]["documents"]:
#     print(doc.content)
#     print("-" * 10)

from haystack.utils import Secret
from haystack.components.builders import PromptBuilder

retriever = MilvusEmbeddingRetriever(document_store=document_store, top_k=3) 
 text_embedder = AmazonBedrockTextEmbedder(model="cohere.embed-english-v3",
                                                                                                                                                                        input_type="search_query"

prompt_template = """Answer the following query based on the provided context. If the context does
                     not include an answer, reply with 'I don't know'.\n
                     Query: {{query}}
                     Documents:
                     {% for doc in documents %}
                        {{ doc.content }}
                     {% endfor %}
                     Answer: 
                  """

rag_pipeline = Pipeline()
rag_pipeline.add_component("text_embedder", text_embedder)
rag_pipeline.add_component("retriever", retriever)
rag_pipeline.add_component("prompt_builder", PromptBuilder(template=prompt_template))
rag_pipeline.add_component("generator", generator)
rag_pipeline.connect("text_embedder.embedding", "retriever.query_embedding")
rag_pipeline.connect("retriever.documents", "prompt_builder.documents")
rag_pipeline.connect("prompt_builder", "generator")

results = rag_pipeline.run({"text_embedder": {"text": question}, "prompt_builder": {"query": question},})
print('RAG answer:\n', results["generator"]["replies"][0])

Optimization Tips

As you build your RAG system, optimization is key to ensuring peak performance and efficiency. While setting up the components is an essential first step, fine-tuning each one will help you create a solution that works even better and scales seamlessly. In this section, we’ll share some practical tips for optimizing all these components, giving you the edge to build smarter, faster, and more responsive RAG applications.

Haystack optimization tips

To optimize Haystack in a RAG setup, ensure you use an efficient retriever like FAISS or Milvus for scalable and fast similarity searches. Fine-tune your document store settings, such as indexing strategies and storage backends, to balance speed and accuracy. Use batch processing for embedding generation to reduce latency and optimize API calls. Leverage Haystack's pipeline caching to avoid redundant computations, especially for frequently queried documents. Tune your reader model by selecting a lightweight yet accurate transformer-based model like DistilBERT to speed up response times. Implement query rewriting or filtering techniques to enhance retrieval quality, ensuring the most relevant documents are retrieved for generation. Finally, monitor system performance with Haystack’s built-in evaluation tools to iteratively refine your setup based on real-world query performance.

Milvus optimization tips

Milvus serves as a highly efficient vector database, critical for retrieval tasks in a RAG system. To optimize its performance, ensure that indexes are properly built to balance speed and accuracy; consider utilizing HNSW (Hierarchical Navigable Small World) for efficient nearest neighbor search where response time is crucial. Partitioning data based on usage patterns can enhance query performance and reduce load times, enabling better scalability. Regularly monitor and adjust cache settings based on query frequency to avoid latency during data retrieval. Employ batch processing for vector insertions, which can minimize database lock contention and enhance overall throughput. Additionally, fine-tune the model parameters by experimenting with the dimensionality of the vectors; higher dimensions can improve retrieval accuracy but may increase search time, necessitating a balance tailored to your specific use case and hardware infrastructure.

Mistral Codestral Mamba optimization tips

Optimize Mistral Codestral Mamba in RAG by fine-tuning on domain-specific data to align outputs with context, adjusting temperature (lower for precision, higher for creativity), and trimming retrieved documents to relevant chunks to reduce noise. Use quantization for faster inference, enable dynamic batching, and limit max tokens to prevent overlong responses. Cache frequent queries, precompute embeddings for common contexts, and leverage hardware acceleration (e.g., CUDA cores). Monitor latency and accuracy to balance speed and quality, and apply prompt engineering with clear instructions to guide context integration.

AmazonBedrock Cohere Embed-English-v3 optimization tips

To optimize Cohere Embed-English-v3 in RAG, preprocess input text by removing redundant whitespace, normalizing casing, and filtering low-relevance content to reduce noise. Use batch embedding generation for bulk documents to minimize API calls and latency. Adjust the input_type parameter (e.g., "document" or "query") to align with use cases for context-aware embeddings. Experiment with chunk sizes (e.g., 256-512 tokens) to balance semantic capture and computational efficiency. Cache frequent or static embeddings to avoid reprocessing. Monitor embedding quality via cosine similarity checks and fine-tune retrieval thresholds for your dataset.

By implementing these tips across your components, you'll be able to enhance the performance and functionality of your RAG system, ensuring it’s optimized for both speed and accuracy. Keep testing, iterating, and refining your setup to stay ahead in the ever-evolving world of AI development.

RAG Cost Calculator: A Free Tool to Calculate Your Cost in Seconds

Estimating the cost of a Retrieval-Augmented Generation (RAG) pipeline involves analyzing expenses across vector storage, compute resources, and API usage. Key cost drivers include vector database queries, embedding generation, and LLM inference.

RAG Cost Calculator is a free tool that quickly estimates the cost of building a RAG pipeline, including chunking, embedding, vector storage/search, and LLM generation. It also helps you identify cost-saving opportunities and achieve up to 10x cost reduction on vector databases with the serverless option.

Calculate your RAG cost now.

Calculate your RAG cost

What Have You Learned?

By diving into this tutorial, you’ve unlocked the magic of building a powerful RAG system from the ground up! You learned how Haystack serves as the backbone of your pipeline, seamlessly orchestrating workflows to connect your data sources with generative AI. With Milvus as your vector database, you saw firsthand how lightning-fast similarity searches and scalable storage for embeddings empower your system to retrieve context quickly and accurately. Then, Mistral Codestral Mamba stepped in as your LLM powerhouse, turning retrieved information into coherent, precise responses—whether answering questions, summarizing content, or solving problems. And let’s not forget Amazon Bedrock’s Cohere Embed English-v3, which transformed raw text into rich, semantic embeddings, ensuring your system understands the nuances of language and delivers relevant results. Together, these tools create a symphony of efficiency and intelligence, proving that RAG isn’t just a concept—it’s a tangible, game-changing solution you can build yourself!

But wait, there’s more! You also picked up pro tips for optimizing performance, like tweaking chunking strategies or adjusting indexing parameters in Milvus to balance speed and accuracy. The tutorial even threw in a free RAG cost calculator to help you estimate expenses and scale smartly. Now that you’ve seen how these pieces fit together—and how to fine-tune them—you’re ready to take the reins. Imagine the applications you could create: chatbots that truly understand user needs, research assistants that synthesize mountains of data, or creative tools that spark innovation. The sky’s the limit, and you’ve got the blueprint. So fire up your IDE, experiment with these tools, and start building something extraordinary. Your RAG journey is just beginning—go make it legendary! 🚀

Further Resources

🌟 In addition to this RAG tutorial, unleash your full potential with these incredible resources to level up your RAG skills.

How to Build a Multimodal RAG | Documentation
How to Enhance the Performance of Your RAG Pipeline
Graph RAG with Milvus | Documentation
How to Evaluate RAG Applications - Zilliz Learn
Generative AI Resource Hub | Zilliz

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