Build RAG Chatbot with Haystack, Milvus, Google Vertex AI Gemini 2.0 Flash, and OpenAI text-embedding-3-large

Introduction to RAG

Retrieval-Augmented Generation (RAG) is a game-changer for GenAI applications, especially in conversational AI. It combines the power of pre-trained large language models (LLMs) like OpenAI’s GPT with external knowledge sources stored in vector databases such as Milvus and Zilliz Cloud, allowing for more accurate, contextually relevant, and up-to-date response generation. A RAG pipeline usually consists of four basic components: a vector database, an embedding model, an LLM, and a framework.

Key Components We'll Use for This RAG Chatbot

This tutorial shows you how to build a simple RAG chatbot in Python using the following components:

Haystack: An open-source Python framework designed for building production-ready NLP applications, particularly question answering and semantic search systems. Haystack excels at retrieving information from large document collections through its modular architecture that combines retrieval and reader components. Ideal for developers creating search applications, chatbots, and knowledge management systems that require efficient document processing and accurate information extraction from unstructured text.
Milvus: An open-source vector database optimized to store, index, and search large-scale vector embeddings efficiently, perfect for use cases like RAG, semantic search, and recommender systems. If you hate to manage your own infrastructure, we recommend using Zilliz Cloud, which is a fully managed vector database service built on Milvus and offers a free tier supporting up to 1 million vectors.
Google Vertex AI Gemini 2.0 Flash: A lightweight, high-speed AI model optimized for rapid inference and cost-effective scalability. It excels in real-time applications requiring low latency, such as chatbots, summarization, and data processing, balancing performance with efficiency for high-volume enterprise workloads on Google Cloud.
OpenAI text-embedding-3-large: A state-of-the-art embedding model designed to convert text into high-dimensional vectors, capturing deep semantic relationships. Renowned for its accuracy, scalability, and ability to handle long contexts (up to 8192 tokens), it excels in semantic search, retrieval-augmented generation (RAG), recommendation systems, and multilingual NLP tasks requiring nuanced language understanding.

By the end of this tutorial, you’ll have a functional chatbot capable of answering questions based on a custom knowledge base.

Note: Since we may use proprietary models in our tutorials, make sure you have the required API key beforehand.

Step 1: Install and Set Up Haystack

import os
import requests

from haystack import Pipeline
from haystack.components.converters import MarkdownToDocument

from haystack.components.preprocessors import DocumentSplitter
from haystack.components.writers import DocumentWriter

Step 2: Install and Set Up Google Vertex AI Gemini 2.0 Flash

Using theVertexAIGeminiGenerator with Haystack requires authentication using Google Cloud Application Default Credentials (ADCs). This means your application must be set up with credentials that allow it to access Google Cloud services. If you're not sure how to configure ADCs, check the official Google documentation for setup instructions.

It's important to use a Google Cloud account that has the right permissions to access a project with Google Vertex AI endpoints. Without proper access, the generator won’t work as expected.

To find your project ID, you can either look it up in the Google Cloud Console under the resource manager or run the following command in your terminal.

Now let's install and set up this model.

pip install google-vertex-haystack

from haystack_integrations.components.generators.google_vertex import VertexAIGeminiGenerator

generator = VertexAIGeminiGenerator(model="gemini-2.0-flash-001")

Step 3: Install and Set Up OpenAI text-embedding-3-large

Text documents often come with a set of metadata. If they are distinctive and semantically meaningful, you can embed them along with the text of the document to improve retrieval.

from haystack import Document
from haystack.components.embedders import OpenAIDocumentEmbedder

doc = Document(content="some text",meta={"title": "relevant title", "page number": 18})

document_embedder = OpenAIDocumentEmbedder(meta_fields_to_embed=["title"])

docs_w_embeddings = embedder.run(documents=[doc])["documents"]

Now let's install and set up the model.

from haystack import Document
from haystack.components.embedders import OpenAIDocumentEmbedder
from haystack.components.embedders import OpenAITextEmbedder

text_embedder = OpenAITextEmbedder(api_key=Secret.from_token("<your-api-key>"), model="text-embedding-3-large")
document_embedder = OpenAIDocumentEmbedder(api_key=Secret.from_token("<your-api-key>"), model="text-embedding-3-large")

Step 4: Install and Set Up Milvus

pip install --upgrade pymilvus milvus-haystack

from milvus_haystack import MilvusDocumentStore
from milvus_haystack.milvus_embedding_retriever import MilvusEmbeddingRetriever

document_store = MilvusDocumentStore(connection_args={"uri": "./milvus.db"}, drop_old=True,)
retriever = MilvusEmbeddingRetriever(document_store=document_store, top_k=3)

Step 5: Build a RAG Chatbot

Now that you’ve set up all components, let’s start to build a simple chatbot. We’ll use the Milvus introduction doc as a private knowledge base. You can replace it your own dataset to customize your RAG chatbot.

url = 'https://raw.githubusercontent.com/milvus-io/milvus-docs/refs/heads/v2.5.x/site/en/about/overview.md'
example_file = 'example_file.md'
response = requests.get(url)
with open(example_file, 'wb') as f:
    f.write(response.content)
file_paths = [example_file]  # You can replace it with your own file paths.

indexing_pipeline = Pipeline()
indexing_pipeline.add_component("converter", MarkdownToDocument())
indexing_pipeline.add_component("splitter", DocumentSplitter(split_by="sentence", split_length=2))
indexing_pipeline.add_component("embedder", document_embedder)
indexing_pipeline.add_component("writer", DocumentWriter(document_store))
indexing_pipeline.connect("converter", "splitter")
indexing_pipeline.connect("splitter", "embedder")
indexing_pipeline.connect("embedder", "writer")
indexing_pipeline.run({"converter": {"sources": file_paths}})

# print("Number of documents:", document_store.count_documents())
  
question = "What is Milvus?"  # You can replace it with your own question.

retrieval_pipeline = Pipeline()
retrieval_pipeline.add_component("embedder", text_embedder)
retrieval_pipeline.add_component("retriever", retriever)
retrieval_pipeline.connect("embedder", "retriever")

retrieval_results = retrieval_pipeline.run({"embedder": {"text": question}})

# for doc in retrieval_results["retriever"]["documents"]:
#     print(doc.content)
#     print("-" * 10)

from haystack.utils import Secret
from haystack.components.builders import PromptBuilder

retriever = MilvusEmbeddingRetriever(document_store=document_store, top_k=3) 
 text_embedder = OpenAITextEmbedder(api_key=Secret.from_token("<your-api-key>"), model="text-embedding-3-large")

prompt_template = """Answer the following query based on the provided context. If the context does
                     not include an answer, reply with 'I don't know'.\n
                     Query: {{query}}
                     Documents:
                     {% for doc in documents %}
                        {{ doc.content }}
                     {% endfor %}
                     Answer: 
                  """

rag_pipeline = Pipeline()
rag_pipeline.add_component("text_embedder", text_embedder)
rag_pipeline.add_component("retriever", retriever)
rag_pipeline.add_component("prompt_builder", PromptBuilder(template=prompt_template))
rag_pipeline.add_component("generator", generator)
rag_pipeline.connect("text_embedder.embedding", "retriever.query_embedding")
rag_pipeline.connect("retriever.documents", "prompt_builder.documents")
rag_pipeline.connect("prompt_builder", "generator")

results = rag_pipeline.run({"text_embedder": {"text": question}, "prompt_builder": {"query": question},})
print('RAG answer:\n', results["generator"]["replies"][0])

Optimization Tips

As you build your RAG system, optimization is key to ensuring peak performance and efficiency. While setting up the components is an essential first step, fine-tuning each one will help you create a solution that works even better and scales seamlessly. In this section, we’ll share some practical tips for optimizing all these components, giving you the edge to build smarter, faster, and more responsive RAG applications.

Haystack optimization tips

To optimize Haystack in a RAG setup, ensure you use an efficient retriever like FAISS or Milvus for scalable and fast similarity searches. Fine-tune your document store settings, such as indexing strategies and storage backends, to balance speed and accuracy. Use batch processing for embedding generation to reduce latency and optimize API calls. Leverage Haystack's pipeline caching to avoid redundant computations, especially for frequently queried documents. Tune your reader model by selecting a lightweight yet accurate transformer-based model like DistilBERT to speed up response times. Implement query rewriting or filtering techniques to enhance retrieval quality, ensuring the most relevant documents are retrieved for generation. Finally, monitor system performance with Haystack’s built-in evaluation tools to iteratively refine your setup based on real-world query performance.

Milvus optimization tips

Milvus serves as a highly efficient vector database, critical for retrieval tasks in a RAG system. To optimize its performance, ensure that indexes are properly built to balance speed and accuracy; consider utilizing HNSW (Hierarchical Navigable Small World) for efficient nearest neighbor search where response time is crucial. Partitioning data based on usage patterns can enhance query performance and reduce load times, enabling better scalability. Regularly monitor and adjust cache settings based on query frequency to avoid latency during data retrieval. Employ batch processing for vector insertions, which can minimize database lock contention and enhance overall throughput. Additionally, fine-tune the model parameters by experimenting with the dimensionality of the vectors; higher dimensions can improve retrieval accuracy but may increase search time, necessitating a balance tailored to your specific use case and hardware infrastructure.

Google Vertex AI Gemini 2.0 Flash optimization tips

To optimize Gemini 2.0 Flash in RAG, balance chunk size for retrieved documents—smaller chunks (200-400 tokens) improve precision, while larger ones preserve context. Use preprocessing to clean text, remove noise, and add metadata (e.g., timestamps) for relevance scoring. Adjust model parameters: lower temperature (0.2-0.5) for factual outputs, and limit max_output_tokens to reduce latency. Batch process embeddings to cut API calls. Cache frequent queries and responses. Fine-tune with domain-specific data if available. Monitor latency and cost via Vertex AI’s tools, and use asynchronous calls for non-blocking operations.

OpenAI text-embedding-3-large optimization tips

Optimize OpenAI text-embedding-3-large in RAG by adjusting the dimensions parameter to balance accuracy and efficiency—lower values reduce latency and cost while retaining semantic relevance. Batch embedding requests to maximize throughput, preprocess text to remove noise (e.g., truncate to 8191 tokens, normalize whitespace), and cache frequent queries. Use cosine similarity for retrieval alignment, validate embeddings with domain-specific benchmarks, and fine-tune hybrid search strategies (e.g., combining sparse/dense vectors) to improve recall. Monitor API rate limits and leverage asynchronous calls for scalability.

By implementing these tips across your components, you'll be able to enhance the performance and functionality of your RAG system, ensuring it’s optimized for both speed and accuracy. Keep testing, iterating, and refining your setup to stay ahead in the ever-evolving world of AI development.

RAG Cost Calculator: A Free Tool to Calculate Your Cost in Seconds

Estimating the cost of a Retrieval-Augmented Generation (RAG) pipeline involves analyzing expenses across vector storage, compute resources, and API usage. Key cost drivers include vector database queries, embedding generation, and LLM inference.

RAG Cost Calculator is a free tool that quickly estimates the cost of building a RAG pipeline, including chunking, embedding, vector storage/search, and LLM generation. It also helps you identify cost-saving opportunities and achieve up to 10x cost reduction on vector databases with the serverless option.

Calculate your RAG cost now.

Calculate your RAG cost

What Have You Learned?

By diving into this tutorial, you’ve unlocked the power of combining cutting-edge tools to build a robust RAG system from scratch! You learned how Haystack serves as the flexible framework that orchestrates the entire pipeline, simplifying the integration of components while giving you full control over customization. Milvus, the high-performance vector database, steps in to store and retrieve embeddings at lightning speed, ensuring your system handles large-scale data effortlessly. The Google Vertex AI Gemini 2.0 Flash model became your go-to LLM for generating accurate, context-aware responses, balancing speed and cost-efficiency perfectly. Meanwhile, OpenAI’s text-embedding-3-large transformed raw text into rich, semantic embeddings, capturing nuances that make your RAG system truly intelligent. Together, these tools form a seamless workflow: ingest data, embed it, store it efficiently, and retrieve answers with precision—all while staying scalable and adaptable to your needs.

But this tutorial didn’t stop there! You also picked up pro tips for optimizing performance, like tuning retrieval parameters and balancing latency with accuracy. Plus, the free RAG cost calculator introduced here empowers you to estimate expenses upfront, making it easier to plan and iterate without surprises. Now that you’ve seen how these pieces fit together—and how to tweak them for maximum impact—you’re ready to create your own AI-powered applications. Whether you’re enhancing customer support, building smart search tools, or exploring uncharted use cases, the possibilities are endless. So grab your tools, experiment fearlessly, and let your creativity shape the future of intelligent systems. The world of RAG is yours to build—go make it amazing! 🚀

Further Resources

🌟 In addition to this RAG tutorial, unleash your full potential with these incredible resources to level up your RAG skills.

How to Build a Multimodal RAG | Documentation
How to Enhance the Performance of Your RAG Pipeline
Graph RAG with Milvus | Documentation
How to Evaluate RAG Applications - Zilliz Learn
Generative AI Resource Hub | Zilliz

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